Index

A

all_msds() (in module diff_classifier.msd) all_msds2() (in module diff_classifier.msd) alpha_calc() (in module diff_classifier.features)

aspectratio() (in module diff_classifier.features) assemble_msds() (in module diff_classifier.knotlets) asymmetry() (in module diff_classifier.features)

B

binning() (in module diff_classifier.msd) boundedness() (in module diff_classifier.features)

build_KNN_model() (in module diff_classifier.pca) Bunch (class in diff_classifier.msd) (class in diff_classifier.pca)

C

calculate_features() (in module diff_classifier.features)

csv_to_pd() (in module diff_classifier.utils)

D

diff_classifier (module) diff_classifier.aws (module) diff_classifier.features (module) diff_classifier.heatmaps (module) diff_classifier.imagej (module)

diff_classifier.knotlets (module) diff_classifier.msd (module) diff_classifier.pca (module) diff_classifier.utils (module) download_s3() (in module diff_classifier.aws)

E

efficiency() (in module diff_classifier.features)

F

feature_plot_2D() (in module diff_classifier.pca) feature_plot_3D() (in module diff_classifier.pca)

feature_violin() (in module diff_classifier.features) (in module diff_classifier.pca)

G

geomean_msdisp() (in module diff_classifier.msd)

gyration_tensor() (in module diff_classifier.features)

K

kmo() (in module diff_classifier.pca)

kurtosis() (in module diff_classifier.features)

M

make_xyarray() (in module diff_classifier.msd) mean_intensity() (in module diff_classifier.imagej)

minboundrect() (in module diff_classifier.features) msd_calc() (in module diff_classifier.msd) msd_ratio() (in module diff_classifier.features)

N

nth_diff() (in module diff_classifier.msd)

P

partial_corr() (in module diff_classifier.pca) partition_im() (in module diff_classifier.imagej) pca_analysis() (in module diff_classifier.pca) plot_all_experiments() (in module diff_classifier.msd) plot_heatmap() (in module diff_classifier.heatmaps) plot_histogram() (in module diff_classifier.heatmaps) plot_individual_msds() (in module diff_classifier.heatmaps)

plot_particles_in_frame() (in module diff_classifier.heatmaps) plot_pca() (in module diff_classifier.pca) plot_scatterplot() (in module diff_classifier.heatmaps) plot_trajectories() (in module diff_classifier.heatmaps) precision_averaging() (in module diff_classifier.msd) precision_weight() (in module diff_classifier.msd) predict_KNN() (in module diff_classifier.pca)

R

random_traj_dataset() (in module diff_classifier.msd) random_walk() (in module diff_classifier.msd)

recycle_pcamodel() (in module diff_classifier.pca) regress_sys() (in module diff_classifier.imagej) regress_tracking_params() (in module diff_classifier.imagej)

S

split() (in module diff_classifier.knotlets)

split_track_msds() (in module diff_classifier.knotlets)

T

track() (in module diff_classifier.imagej)

tracking() (in module diff_classifier.knotlets)

U

unmask_track() (in module diff_classifier.features)

upload_s3() (in module diff_classifier.aws)

V

voronoi_finite_polygons_2d() (in module diff_classifier.heatmaps)